SPSCAN alphabetic index


program documentation / database / internals / methods
A B C D E F G H I K L M N O P R S T U W X footnotes
- A -
access macro command
assignment
assign automatically picked peaks - (m)
assignment_manager (m)
assignment tool
change assignment of individual resonances
get assignments from another peaklist, based on ppm positions - (m)
mode
projected experiments
atom_map_entry, atom_map_list
atom names
mapping
average chemical shift
- B -
backup - (m)
bug reports
- C -
calibration
adapt spectra to default calibration
class calibration, methods
determine systematic ppm differences between peaklists - (m)
chemical shift
library with average ppm / standard dev.
list: see proton list
cluster
color
general
of spectra
combine macro
command_handler (also see: macro)
coupling constants
from ecosy spectra
from volume ratios in ct spectra w/wo decoupling
customization (resources)
- D -
database of fragments and assignments - (m)
deconvolute volumes
default
paths
directory structure
display of spectra - (m)
distance between peaks
distance constraints
construction of *.lol list from peaklist
- E -
ecosy tool
- F -
folding of peaks
formats
chemical shift list
internal formats
peak list
proton list
sequence list
spectra
- H -
HCCH evaluation
HOW TO
Change assignments
integrate
run spscan
- I -
inames
INFIT tool
installation
integration
2D spectra
parameters
pseudo 3D spectra
- J -
jump return NOESY - volume correction
- K -
keyboard commands
- L -
libraries
residues and atom names
simulation of peaklists
spectra to display sequential connection
license
linewidth
get linewidth back after XEASY modification
normalize_lw - correct linewidth of peaklist
check / adapt interface commands
- M -
macros
mapping
of atom names
- N -
NOAH tool
copy (internal)
keys and mouse usage
NMRPipe spectral data format conversion
macro pipe2xeasy
- O -
overlap
get_isolation_status
handle overlapping peaks and stereopairs with small ppm difference
- P-
peaklist
assignment tool
formats
display in spectra
internal formats
overlapping peaks - remove
read
simulate
write
pipe2xeasy NMRPipe to xeasy 16bit transformation of spectral formats
project
general concept
proton_entry, proton_list
pseudoatoms
- Q -
quality parameter qual
rd_param * rdpa
reduced dimensionality experiments
parameters
relaxation data (T1 / T2 from a series of peaklists)
integration howto
fit (combine ... macro command)
from 1D spectra
release
roesy - volume_correction
residue type
determination from ppm values
mapping (xeasy compatibility)
resources (user customization)
- S -
scpa
sequence_info, sequence_info_entry (m)
sequential connection (n - n+1) - (m)
shifting peaks
limits
with the mouse
simulate
peaklist
spectra
access to NMRPipe and Bruker spectra
peaklist display
intensity plots
formats
spin system tool
Statistics
- T -
tables
traditional_calibration
tsst TOCSY spin system tool
- U -
UXNMR spectra
volumes
correction
deconvolution of overlapping peaks
- W -
wiggles
writing spectra
- X -
X-window resources
XEASY data exchange

(m)
provides a link to the description of the method - the full text usually provides a link to a more general description of the topic, or how the method is called

alphabetic index / program documentation / database / internals / methods
Dr. Ralf W. Glaser
FSU Jena, Institut fuer Molekularbiologie
Winzerlaer Strasse 10
D-07745 Jena, Germany
Tel.: +49-3641-65-7573
Fax: +49-3641-65-7520
E-mail: Ralf.Glaser@uni-jena.REMOVSPMTAG.de

Last modified: July 1998